rs32894744 SNP Detail

Summary

• ID
  rs32894744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102492222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCGAGCCA GTGAAATAGA
  CTTGAAAGCT CAAAACTGTG TACAACAAAA TGTTATCTTT CCAGGATGAT TCTGGGATTT
  GGCATAGCTT TGGGGTATCA TCTGGAAATG TCAGTTGTCA GTAATGAAAG TGTGAGCCCT
  GGATGGTGCC TATTGTTGGC TTTTTTGGAA ATCTTTATAT ATATATATCC AGCAAGTGGC
  Y
  TTTTTAGAAT ACTTTCATAG CTTCTGCGTT TGATCTTTGC CATCTTACAG AGCATTACTG
  TCCGGTTATT TGAAGTTTCT GATTGTGTTT CACTGGGAAC ATCAGCATGG CTTTTGTAAA
  ACTCAGCAGT GGCTCTCATA GTTTTCAGGT TCTGAGAAGT GTTTTCCTAT AGAAGCAAGG
  TTCAATTTGA CAGCTGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45208879	mCV23733843	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss147119855	ENSMUSSNP1027003	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320439920	CHEV_2_102502034	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs32894744					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102492222 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm57687	predicted gene, 57687			within coordinates
Rr561716	regulatory region 561716			1801 bp distal
Rr561717	regulatory region 561717			420 bp proximal
Rr561718	regulatory region 561718			995 bp proximal
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2			Intron
				Noncoding-Transcript-Variant