rs32894900 SNP Detail

Summary

• ID
  rs32894900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88498666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGGTGG AATTTGAGCC
  TCCCTTCAGC AGTGGCTGGG GAGAATGTAA GCACTCCTGA AGTCTGTCGA CAGGCTTAGC
  TGAAATAGTT GGCTTCAGCA CTGCCCTTGT CACCTTGAGG CTATCAGATA GGATGACTGC
  CAACACACAC ACACACACAC ACACACACAC ACCCTCAAAG GTGTGAAACC TGAATCAGGT
  Y
  GTATGCCGAT CTGTGAGAAG AGAAGGACGA TGAGCATCCC CCTCATTACC CTGAAGATTG
  GGTGTCCAAA TGGGGGCTCC ACCCTAAAAG GCTAGCTAGC AACCCTGGAG ACAGCAGGTA
  CTAGGTCTCT TCTACCTTCT GCAGACAGCC CTCGAGTACC CCCACAGCAT CCCATCTCCG
  TTCAGATTGG TACCAGAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46743914	NES10747426	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32894900					SNP	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743914	NES10747426	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88498666 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	655 bp upstream
Rr397772	regulatory region 397772	597 bp upstream
Rr397773	regulatory region 397773	1980 bp upstream
Rr579834	regulatory region 579834	within coordinates
Rr579835	regulatory region 579835	736 bp proximal
Tssr29977	transcription start site region 29977	1731 bp upstream
Tssr29978	transcription start site region 29978	1759 bp upstream
Tssr29979	transcription start site region 29979	1810 bp upstream