rs32894903 SNP Detail

Summary

• ID
  rs32894903
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88499091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCTGGAGC ATGGAGGGTA ACACTGACCA CACAGCGGGG
  ATCCCAGCCC CTAGGTGGCC ACTCAGCGTT GGCCTCTGTC TTGGAGCTTG CATCCTCATC
  M
  AGATTGTTCA ATGTGGATTT CCACGGCCTC CTCCCCACTG AGAGGGCACA AGCATCTCTC
  CTGTATTCTT AGGGAAAAGC AAACCACTGT CCCTCTCAC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45473131	mCV23479694	ABI	CRAMUS_MOUSE	f	SNP		C	A				C		A
ss46743917	NES10747427	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	A	A		A	A	C		A	C	C	A		C
ss135470491	ENSMUSSNP3890345	ENSEMBL	ENSEMBL_Sanger	f	SNP			A						A
ss320835710	CHEV_3_88395706	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32894903					SNP	C	C	A	C	A	A	C	A	A	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743917	NES10747427	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88499091 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	230 bp upstream
Rr397772	regulatory region 397772	172 bp upstream
Rr397773	regulatory region 397773	1555 bp upstream
Rr579834	regulatory region 579834	232 bp distal
Rr579835	regulatory region 579835	311 bp proximal
Tssr29977	transcription start site region 29977	1306 bp upstream
Tssr29978	transcription start site region 29978	1334 bp upstream
Tssr29979	transcription start site region 29979	1385 bp upstream