rs32895726 SNP Detail

Summary

• ID
  rs32895726
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88499161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGACTGGA AGTTAATCTC
  CCCCAGAGCA CAGCTGGAGC ATGGAGGGTA ACACTGACCA CACAGCGGGG ATCCCAGCCC
  CTAGGTGGCC ACTCAGCGTT GGCCTCTGTC TTGGAGCTTG CATCCTCATC CAGATTGTTC
  AATGTGGATT TCCACGGCCT CCTCCCCACT GAGAGGGCAC AAGCATCTCT CCTGTATTCT
  Y
  AGGGAAAAGC AAACCACTGT CCCTCTCACA TTTGGTTGGA GTAGGGAAGG ATGCATCGTT
  CCTTCTGGAT GCCTCCCCCT TACCCACAGC AAGGACCTCA GAGCAAAGGC TAGCTGATCA
  GAAGACAACT AATTTGTTTG CTTTATTCAA TAGGTCACAA TCGCTTCTCG GCCTTTTGGC
  TAAGATCAAG TGTAGTATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46743920	NES10747428	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32895726					SNP	T	T	T	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46743920	NES10747428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88499161 () rs orientation: forward

Symbol	Name	Function Class
Gm52660	predicted gene, 52660	160 bp upstream
Rr397772	regulatory region 397772	102 bp upstream
Rr397773	regulatory region 397773	1485 bp upstream
Rr579834	regulatory region 579834	302 bp distal
Rr579835	regulatory region 579835	241 bp proximal
Tssr29977	transcription start site region 29977	1236 bp upstream
Tssr29978	transcription start site region 29978	1264 bp upstream
Tssr29979	transcription start site region 29979	1315 bp upstream