rs32897336 SNP Detail

Summary

• ID
  rs32897336
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174313806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTATTAAA ACAGTGTGGC
  AACATTGGCC AAGTGAGTGA AGGAGCTCAG ATCATCTGGA AGTGGTTTCG GATGTAAGTC
  AACAATAACT ATGACAAGAT GACATTGTAG AATAGAGCAC AATAAATCAG TCAGAAAGGA
  GGGCTGGAAC AAGGCGTAAA CCAGTTATTT AGGTAGAAAG CTCTGTTGTT CTTGTGTGTG
  R
  CACCATGAAC CTGGGTGGTA TAATTCCCAA CACCCCACTG ACTCTGATCC TGTTTCCCAC
  TATAAGTTCA GAGAACCATA AAGCTGTGAC TGGATGTGAT AGCAGACACT GGCTATCAGT
  CAGCTGTCAT GGCTGAGAGG AATAGGAAAC AGAGGTGACA AATTATCTGC AAGAGCAGGC
  CCTGGTCTCT AGATCAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45209235	mCV23192769	ABI	CRAMUS_MOUSE	f	SNP	A	G	G
ss148343891	ENSMUSSNP2367729	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320627894	CHEV_2_174297514	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32897336					SNP	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174313806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	305 bp proximal
Gm38546	predicted gene, 38546	1076 bp upstream
Prelid3b	PRELI domain containing 3B	within coordinates
Rr397557	regulatory region 397557	864 bp upstream
Rr572131	regulatory region 572131	1086 bp distal
Rr572132	regulatory region 572132	697 bp distal
Rr572133	regulatory region 572133	within coordinates
Rr572134	regulatory region 572134	589 bp proximal
Rr572135	regulatory region 572135	875 bp proximal
Rr572136	regulatory region 572136	984 bp proximal
Rr572137	regulatory region 572137	1058 bp proximal
Rr572138	regulatory region 572138	1183 bp proximal
Tssr28035	transcription start site region 28035	865 bp downstream
Tssr28036	transcription start site region 28036	936 bp downstream