rs32897527 SNP Detail

Summary

• ID
  rs32897527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:136014285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACGTAT TGTGGTGTGG
  GAAATAGTAA GTCGAGGAGT GGTTAATTCT AGATGTGGTG TCCAAGGATG GAGCGAAGAG
  TGATAAAGGG TGGGGAGAAA CAGAACAGCA GTTGGCTCTA GAACTGGGCC ATAAAGACGA
  GAATTTCACT GGTCTAAGAA AAGGAGAGCC TTGTATGTAA GGGTCCAAAG TGGGCAGGGA
  Y
  GGCCTGAGCG GGAAGCTAGT AGATTGCCCC TGTCTTTTGA CCACATGTCT TTTTTTCTTC
  TTTCTTTATT ATTTTTTTTT TCCTTCGGAC TCTACAGATG AGACTTAATG CCACTGCCTT
  CTCGACATTT CTAACCATGT CTCTAATTTC AAGAAGAAAA GCTGGTTCTA AACTCCTAGA
  TACCAAGTAG TGAGGAAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45709577	mCV25110793	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32897527					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136014285 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15107	CpG island 15107	441 bp distal
Rr398613	regulatory region 398613	1428 bp downstream
Rr602341	regulatory region 602341	897 bp distal
Rr602342	regulatory region 602342	214 bp distal
Rr602343	regulatory region 602343	886 bp proximal
Rr602344	regulatory region 602344	1590 bp proximal
Tssr39697	transcription start site region 39697	860 bp downstream
Tssr39698	transcription start site region 39698	824 bp downstream
Tssr39699	transcription start site region 39699	784 bp downstream
Zfp46	zinc finger protein 46	Intron