rs32897756 SNP Detail

Summary

• ID
  rs32897756
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88625635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTCTCC TGTGTCTTTG
  TCATCTTTGG CTGTCATAGG TTGGTGGAAT GCTAGTGGGG TAAATCTGTC TCCCTGACAC
  CCCCACCTGG GGATGGAACC TGAGACTCTA GCCGAGCATA CCATGCAAGG GCTCTGCCAC
  ATCCCCAGCC TTGTTTTCTC TTGTTTTAAG TTGTGTTATT GTCTTCCTTG ATAACAGGTC
  R
  AAGCCTAAGC TAGCCTTGAA CTCGTAACAC TCCTTCTGCT TAGTCTGAGA GTAGAGGCAT
  GAACCCCATG CCCAGTTCTG TAGTTCGTGG ATTATATTGT TGTTATTAGC TGCTATCTGC
  TATAGACTGA AATGTTACAA AATCATAAGG AAGCAGTTTT GATTCTGAGT GATTATCTTA
  AAGAAATGTT GGGCTGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744724	NES10759516	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32897756					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744724	NES10759516	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88625635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	1088 bp distal
Rit1	Ras-like without CAAX 1	within coordinates
Rr397776	regulatory region 397776	1391 bp downstream
Rr579875	regulatory region 579875	1412 bp distal
Rr579876	regulatory region 579876	198 bp distal
Rr579877	regulatory region 579877	593 bp proximal
Rr579878	regulatory region 579878	850 bp proximal
Tssr30018	transcription start site region 30018	1445 bp downstream
Tssr30019	transcription start site region 30019	1423 bp downstream
Tssr30020	transcription start site region 30020	1407 bp downstream