rs32897759 SNP Detail

Summary

• ID
  rs32897759
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88625721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGATGG AACCTGAGAC
  TCTAGCCGAG CATACCATGC AAGGGCTCTG CCACATCCCC AGCCTTGTTT TCTCTTGTTT
  TAAGTTGTGT TATTGTCTTC CTTGATAACA GGTCAAAGCC TAAGCTAGCC TTGAACTCGT
  AACACTCCTT CTGCTTAGTC TGAGAGTAGA GGCATGAACC CCATGCCCAG TTCTGTAGTT
  Y
  GTGGATTATA TTGTTGTTAT TAGCTGCTAT CTGCTATAGA CTGAAATGTT ACAAAATCAT
  AAGGAAGCAG TTTTGATTCT GAGTGATTAT CTTAAAGAAA TGTTGGGCTG AGGAGGGCAC
  AAAGCTCTGC CATTAGCTGG GAGTGATGAC AGACATCTGT AATGCCAGCA CTTGGGAAGC
  AAAAGCAGGA GGAGTGTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744727	NES10759425	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32897759					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744727	NES10759425	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88625721 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	1174 bp distal
Rit1	Ras-like without CAAX 1	within coordinates
Rr397776	regulatory region 397776	1477 bp downstream
Rr579875	regulatory region 579875	1498 bp distal
Rr579876	regulatory region 579876	284 bp distal
Rr579877	regulatory region 579877	507 bp proximal
Rr579878	regulatory region 579878	764 bp proximal
Tssr30018	transcription start site region 30018	1531 bp downstream
Tssr30019	transcription start site region 30019	1509 bp downstream
Tssr30020	transcription start site region 30020	1493 bp downstream