rs32898212 SNP Detail

Summary

• ID
  rs32898212
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:17585740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAC CATACAATTG GCCACGCGAG
  M
  GAGCCCGAGG GCTCTGTGGG GGCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46206929	mCV22769822	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss148767249	ENSMUSSNP3624920	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322521713	CHEV_8_17535724	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32898212					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:17585740 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20134	CpG island 20134	within coordinates
Csmd1	CUB and Sushi multiple domains 1	138 bp upstream
Gm63936	predicted gene, 63936	within coordinates
Rr660279	regulatory region 660279	454 bp distal
Rr660280	regulatory region 660280	within coordinates
Rr660281	regulatory region 660281	1807 bp proximal
Tssr80518	transcription start site region 80518	527 bp upstream
Tssr80519	transcription start site region 80519	505 bp upstream
Tssr80520	transcription start site region 80520	484 bp upstream
Tssr80521	transcription start site region 80521	334 bp upstream
Tssr80522	transcription start site region 80522	92 bp upstream
Tssr80523	transcription start site region 80523	79 bp upstream
Tssr80524	transcription start site region 80524	47 bp upstream