rs32899614 SNP Detail

Summary

• ID
  rs32899614
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:16888254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GAGCGTGGAG GGGCGGAGCG GCGGGAACGC GAGGGCGGGG CTCGGACACT GATTGGGCAT
  CGCCACGTTC CGAGGCCGTT TATGGCGGCT GGGCTGGGCT ACGGGTCCAA AACAAAGGGC
  AGGCGGCCCG CGAGGCGGCG GCAGGAGGAT GCCTCGCGCC CGGAGTGGGC GCCAACGGCC
  GGAGCGCGTC CCGGGTCACA CCGGGACCGC CTGAAAACCG AGCTCGCGCC GACCGAGCCT
  GGGCCGGATG GGCGCAGCGG ACCGCGGAGC GGCCGTGAGT ACGGGCGGGC CTCAGGGGTT
  Y
  TCTGCGGAGA CCTGAGGATC TCCGGCTCCG GGAGGCGGGG AAGCACCTGT TGGGCGCGGG
  CGGGCCGGGC GGGAGTGCGG AGGATGCGTT GACTTTTTGT TCTGATGTTC CGAACTGTTG
  GTATTTGGGT CATTAGAAGA CAACGCAAAA TCCCGGTCTT TCTTTCTTTC TTTTTTCTTC
  GCCCCCCCCC CCCCATTGTT TTTTCCCCTA CCTTAAAAAA TGGGGAAAGA AATAAATACA
  GAAGATACCT CCAATAAAAG AATATTATGG GGTGGCATTT TCAAGTTGCC TGTACAATAA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39466821	mCV27574965	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32899614					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:16888254 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8003	CpG island 8003	within coordinates
Gm59807	predicted gene, 59807	350 bp upstream
Rr316811	regulatory region 316811	854 bp distal
Rr324980	regulatory region 324980	within coordinates
Tssr137265	transcription start site region 137265	175 bp downstream
Tssr137266	transcription start site region 137266	151 bp downstream
Tssr137267	transcription start site region 137267	136 bp downstream
Tssr137268	transcription start site region 137268	115 bp downstream
Tssr137269	transcription start site region 137269	70 bp downstream
Tssr137270	transcription start site region 137270	54 bp downstream
Tssr137271	transcription start site region 137271	45 bp downstream
Ypel1	yippee like 1	within coordinates