rs32900950 SNP Detail

Summary

• ID
  rs32900950
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88622535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGATGG GGGAATTTTG
  TATTTAAGGC CTGCCCGGGT TACATGAGAC TCAGACCCTA AAAACAAGAT AAAATAATTG
  TACTTGAAGA CTAAGGCAAG ATTGCTATGG TTTCTAAGTC AGCCTGTGAC TTAGAACCCT
  AAACCATCCT TTCTGTTCCC TCCTGGTCTC CCTTCAGCAC TCTTATGCTG AGACAGAAAG
  R
  TCAGGCACTG TAGACTAGCT TAAGCTGCTC ACCTATATCC TGGCTCCAGC AGAAAAGGGA
  AGTGGAGGTT GCAAGAATAA TGCAGGAACG TTTCACTCCA TGTGATGTGC AGAGTGGATG
  AAGCCCAGTT ATGCTAATTT GTTTTTTATG AGACTGGGTC CCACATTGTA GCCTTTACTA
  GCTTGGAAGT CAAAAGAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744694	NES10759549	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32900950					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744694	NES10759549	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88622535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	1516 bp proximal
Rit1	Ras-like without CAAX 1	1619 bp upstream
Rr397776	regulatory region 397776	1408 bp upstream
Rr579875	regulatory region 579875	1204 bp proximal
Tssr30018	transcription start site region 30018	1610 bp upstream
Tssr30019	transcription start site region 30019	1656 bp upstream
Tssr30020	transcription start site region 30020	1688 bp upstream