rs32900952 SNP Detail

Summary

• ID
  rs32900952
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88623655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCCGAG TTCAAATCCC
  AGCAACCACA TGGTGGCTCA CAACCATCCG TAACGAAATC TGATGCCCTC TTCTGGAGTA
  TCTGAGGACA GCTACAGTGT ACTTATATAT AATAAATAAA TAAATCTTTA AAAAAAAAAT
  TCTAACTAGA ATAACTGGAT ACCGCGATCA TCTGGTTTTG GTTTCAAGAG CTTTTGATGT
  R
  ACAGCGTTTT TGGAAAATGA AGCGCTGCTT TGTAGCAAGT ACCATACCTA CCCTAATGTA
  ATTCTGTATT TTGGAAAGAT TGAGGGGGTG TGGGTTTGTT GTGCTGTACA TCTGGTGACA
  GATATTTTCC CTCTACCAGC AGCAAATAGC CCTAAGTTAA TCACTTTAAA AGTATCTGTT
  CGTGGCTGGA GAGATGGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744697	NES10759535	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32900952					SNP	A	A	A	A	A	A	G	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744697	NES10759535	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88623655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	396 bp proximal
Rit1	Ras-like without CAAX 1	499 bp upstream
Rr397776	regulatory region 397776	288 bp upstream
Rr579875	regulatory region 579875	84 bp proximal
Rr579876	regulatory region 579876	1560 bp proximal
Tssr30018	transcription start site region 30018	490 bp upstream
Tssr30019	transcription start site region 30019	536 bp upstream
Tssr30020	transcription start site region 30020	568 bp upstream