rs32901715 SNP Detail

Summary

• ID
  rs32901715
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88624032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCGTGGC TGGAGAGATG
  GCTTAGGTGT TAAGAGCACT GCTCTTCCAA AGGTCCTGAG TTCAAATTCC AGCAACCACA
  TGGTAGCTCA CAACCATCTT AACAAGATCT GACATCCACT TCTGGAGTGT CTGAAGACAG
  CTACAGTGTA CTTACATATA ATAAATTAAT AAATCTTTAA AAGTATCTGT TCGATTAATA
  K
  AACATCCATT TTTGTAAGTG CAAGCCTTGA GATTCGTATG TGACCAGAGG GCTTAGCGAG
  TTAGAGTTAG GCGCGGGGCG GAGCAGAGTA TCTGTCAGCT GTGGGGGCGG GGCTCAGGGT
  CATGCCCCGC CCACCGGCGC CATCTTCCAG GACCCGGGCG GGGCCCTGGG CTGTGGGGCG
  CAGCTGGGAA AGGAACGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744700	NES10759505	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32901715					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744700	NES10759505	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88624032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	19 bp proximal
Rit1	Ras-like without CAAX 1	122 bp upstream
Rr397776	regulatory region 397776	within coordinates
Rr579875	regulatory region 579875	within coordinates
Rr579876	regulatory region 579876	1183 bp proximal
Tssr30018	transcription start site region 30018	113 bp upstream
Tssr30019	transcription start site region 30019	159 bp upstream
Tssr30020	transcription start site region 30020	191 bp upstream