rs32901721 SNP Detail

Summary

• ID
  rs32901721
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88624099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCAACC ACATGGTAGC
  TCACAACCAT CTTAACAAGA TCTGACATCC ACTTCTGGAG TGTCTGAAGA CAGCTACAGT
  GTACTTACAT ATAATAAATT AATAAATCTT TAAAAGTATC TGTTCGATTA ATATAACATC
  CATTTTTGTA AGTGCAAGCC TTGAGATTCG TATGTGACCA GAGGGCTTAG CGAGTTAGAG
  Y
  TAGGCGCGGG GCGGAGCAGA GTATCTGTCA GCTGTGGGGG CGGGGCTCAG GGTCATGCCC
  CGCCCACCGG CGCCATCTTC CAGGACCCGG GCGGGGCCCT GGGCTGTGGG GCGCAGCTGG
  GAAAGGAACG CGGGTTACCA CCCGGCCTCA AAGCTGGTTT CAGAGGTACA GGCTCAGGTG
  AACAGGGCGG GGGGGTGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744706	NES10759510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32901721					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744706	NES10759510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88624099 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	within coordinates
Rit1	Ras-like without CAAX 1	55 bp upstream
Rr397776	regulatory region 397776	within coordinates
Rr579875	regulatory region 579875	within coordinates
Rr579876	regulatory region 579876	1116 bp proximal
Tssr30018	transcription start site region 30018	46 bp upstream
Tssr30019	transcription start site region 30019	92 bp upstream
Tssr30020	transcription start site region 30020	124 bp upstream