rs32902487 SNP Detail

Summary

• ID
  rs32902487
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88624477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAACAGGG CGGGGGGGTG
  ACGGTGGCGG GAAAGGTGGT GAAGTGGGGG AGCCACGGCC ACCGTGAAAG AACGTGACAG
  TGTCAGGCAG CGCTCTGCAC TCATCCGGCT CCTTCCTACT GGCACGCTGC CTCAATCTGA
  AGTTTTAAGT TCTTTTTAGT TTTCTGGAAA AAGTAAGTTT GGACATCTAT GATCTGTTTT
  W
  GGACTGAGAC TGATTGTGAA GGGCGAGGAT GTAGGGCTTC TTAGCGTTCT GCAATGAGCA
  GAGTAGGCCA TGGTGTTTGG GGACGGAAGA AGGAGGCTCT CACTGTGGCC CACTGTTTCC
  ATCCTGGATT GAATGTTCTG TGCCTTCTCC TCTAGGAGGC CTTTCCCAGG GGCCCAGGAC
  TGCCCCGGAG GACAATGGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744712	NES10759512	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32902487					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744712	NES10759512	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88624477 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	within coordinates
Rit1	Ras-like without CAAX 1	within coordinates
Rr397776	regulatory region 397776	233 bp downstream
Rr579875	regulatory region 579875	254 bp distal
Rr579876	regulatory region 579876	738 bp proximal
Rr579877	regulatory region 579877	1751 bp proximal
Tssr30018	transcription start site region 30018	287 bp downstream
Tssr30019	transcription start site region 30019	265 bp downstream
Tssr30020	transcription start site region 30020	249 bp downstream