rs32902490 SNP Detail

Summary

• ID
  rs32902490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:88625057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCATTGG TAAGTCAGCT CCTTGTTTAT ATTTCCAGAT
  ACAGCCTGGG AAAGTATCTC AATAGAGTTA GAGCTTAAAA AGTAATATTT ATATCCTAAG
  Y
  TTGTTTGTGT ATGTAATTCA TACTTACTTA GAGACCAGAA TAAACATTTG AGTATTTATT
  TTAGACTTCA TATGCACATT TATGCTATCT TTAGTCTTCA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46744715	NES10759513	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32902490					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46744715	NES10759513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:88625057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13390	CpG island 13390	510 bp distal
Rit1	Ras-like without CAAX 1	within coordinates
Rr397776	regulatory region 397776	813 bp downstream
Rr579875	regulatory region 579875	834 bp distal
Rr579876	regulatory region 579876	158 bp proximal
Rr579877	regulatory region 579877	1171 bp proximal
Rr579878	regulatory region 579878	1428 bp proximal
Tssr30018	transcription start site region 30018	867 bp downstream
Tssr30019	transcription start site region 30019	845 bp downstream
Tssr30020	transcription start site region 30020	829 bp downstream