rs32909613 SNP Detail

Summary

• ID
  rs32909613
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71150090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCACATAG AAGGCAGAAG GATCACTTCT CAAGTCTAGC
  CTGAGCTACA GAAAAATTCT GTCTCAAAAC AAAGGCAAAA ACAAAACAAA ACAAAAAAAA
  M
  CCCACAAGCT CACCCCAGAA CTTCCATCAG CAGGAGCCCC AGGTCAACCT GGGTTACAGC
  TTTTGCATAG TGCCCTTTAA CTCTAGCACT TAGCAGGTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46208726	mCV22788482	ABI	CRAMUS_MOUSE	f	SNP	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32909613					SNP	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71150090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1760 bp distal
Cpgi20486	CpG island 20486	429 bp distal
Gm11175	predicted gene 11175	1721 bp downstream
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1053 bp upstream
Jund	jun D proto-oncogene	1509 bp upstream
Rr368548	regulatory region 368548	1711 bp downstream
Rr368549	regulatory region 368549	856 bp upstream
Rr368550	regulatory region 368550	1219 bp upstream
Rr400910	regulatory region 400910	1860 bp downstream
Rr664888	regulatory region 664888	438 bp distal
Rr664889	regulatory region 664889	563 bp proximal
Rr664890	regulatory region 664890	1064 bp proximal
Rr664891	regulatory region 664891	1218 bp proximal
Rr664892	regulatory region 664892	1363 bp proximal
Tssr77799	transcription start site region 77799	1086 bp upstream
Tssr77800	transcription start site region 77800	1491 bp upstream
Tssr81647	transcription start site region 81647	877 bp downstream
Tssr81648	transcription start site region 81648	894 bp downstream