rs32919075 SNP Detail

Summary

• ID
  rs32919075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:186960799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGTCAT GTCGTCTAGC
  TGCTGGAAAT GAAAAGTCTT GCTTGTTACG TTCTTCTTGT TTAATGATCA TAGCAACAAG
  GAAGTATTGT AGCAACTGGC AAGGTATCAG TAACACAATA GAATTATTTT ATGTGTCCAT
  AAAAAGTACC TCAGTAGAGA GCGAGGATCA CTAACGACTG GTCTTTCCGC ACGTGGTTAG
  R
  TCGTCATGTT GTGGACAGAT GGAGCGCGCT CCTTGGAGGG AGAGCTAAGG CAGTTTGCAG
  AGTTCCCCTC TCACATTCTT ATCCTCTGAG TCCGTTCCCT TTCACTGTTG ATATACATGT
  TACCACAGTT AAAGAATACA ATGTGTTTTA TTAGAATCAC TGTTTGTTTT TTGTTTAAAA
  TGGCTTTTTT CTGTTTCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46747234	NES10638066	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32919075					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747234	NES10638066	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186960799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpatch2	G patch domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr425579	regulatory region 425579			1656 bp distal
Rr425580	regulatory region 425580			1710 bp distal
Rr425581	regulatory region 425581			within coordinates