rs32919135 SNP Detail

Summary

• ID
  rs32919135
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74540465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGTGAACAC TGGCTACAAG AGAAAAGCCT TCTGAGTGAC AACACCGGAG CCACAGACAA
  AAAGAGGGTG TGGTGGTTCC TCCCTTTTAG AGAAAAGTCG GTTCTAGGAT TCCATTTTCC
  GAGTCCTATT GCTTGCCTCT GCACAGCAGA CAAACAGCAC AACATGGCTG CCTCTCTCTG
  CAGTCTCTCC CCATCCCTCA TTTCCCCCAG GCTGAAAGGG CATGGGATAA GCTCTGCTTT
  TATTTGGATA GAGGGCAGAT GATACAGAGG CAAATTGAGA TTAATTTTTA GAATGTTTTA
  R
  AATTGAACAA TCTCTTTACC CACTTCTATG TGTATCGACC AGGGAATAAG CACCAGCTTG
  CCCATTTCCT TGTGTAATAA CATATTGTTT AATTCACTGC ATAAGAATTC ACATCTAGTG
  TCTCCTCCAT ATCTTGGATG TTTGCTGAAT CCTTGGGTGT CTAGAGGTGG AAAGGGAAAG
  AGAGAGGAAA AAAAAACCAT TTTAATGGAC CAGCAAAATT AGAGCCCACT GGCCTTTTCA
  AGAATTAAGA ATTTTGCTGA CAGATGGTGG CAGAAACCCT TTAATTAAAA TTATCCAAGT
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45212886	mCV23154368	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32919135					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74540465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11801	CpG island 11801	1618 bp proximal
Gm38462	predicted gene, 38462	within coordinates
Hoxd3	homeobox D3	1872 bp upstream
Hoxd3os1	homeobox D3, opposite strand 1	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559370	regulatory region 559370	983 bp distal
Rr559371	regulatory region 559371	within coordinates
Rr559372	regulatory region 559372	1316 bp proximal
Rr559373	regulatory region 559373	1817 bp proximal
Rr559374	regulatory region 559374	1941 bp proximal
Tssr18431	transcription start site region 18431	407 bp downstream
Tssr18432	transcription start site region 18432	1737 bp upstream
Tssr18433	transcription start site region 18433	1767 bp upstream
Tssr18434	transcription start site region 18434	1790 bp upstream
Tssr18435	transcription start site region 18435	1837 bp upstream
Tssr18436	transcription start site region 18436	2000 bp upstream