rs32919728 SNP Detail

Summary

• ID
  rs32919728
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164909409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCATGTG CACATATCAT
  GCACACACAT CATGTGCACA CATCATACAC ACATCATGCA CACACATCAT GTGCACACAT
  CATGCACACA CATCATACAT ACATCATGTG CACATATTAT GCACACACAT CATGTGCACA
  CATCATGCAT ACACATCATA CACACACATC ATGCACACAC ATCATGTGCA CATATCATAC
  W
  CACATCACGT ACACACATCA TGCACACACA TCATACACAC ATATCATGTG CACCCATCAT
  GTGCACACAT CATACACACA TCATGTACAT GCACACCCAC AATAGTGATA AATAAAAGTT
  TAAATATGTT TCTAGGGCTG GGGAGGTGGC ACTTGCTGTT CTGACAGAGG ACCTGGGTTC
  AGTTTCCTGA GCCCATGTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45212363	mCV23187176	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs32919728					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164909409 () rs orientation: forward

Symbol	Name	Function Class
Cd40	CD40 antigen	within coordinates
Rr52793	regulatory region 52793	1614 bp proximal
Tssr21713	transcription start site region 21713	1770 bp downstream
Tssr21714	transcription start site region 21714	805 bp downstream
Tssr21715	transcription start site region 21715	771 bp downstream
Tssr21716	transcription start site region 21716	721 bp downstream
Tssr21717	transcription start site region 21717	628 bp downstream
Tssr21718	transcription start site region 21718	581 bp downstream
Tssr21719	transcription start site region 21719	487 bp downstream
Tssr21720	transcription start site region 21720	294 bp downstream
Tssr21721	transcription start site region 21721	249 bp downstream
Tssr21722	transcription start site region 21722	610 bp upstream