rs32920032 SNP Detail

Summary

• ID
  rs32920032
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118593106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC GGCCTCTCCC TGCCGGCTTC
  W
  GCTTCGCTGC TCAGCACAAG AGATC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45213197	mCV22541293	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	T	A
ss147311989	ENSMUSSNP5837925	ENSEMBL	ENSEMBL_Sanger	f	SNP			A		A
ss320471654	CHEV_2_118588361	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32920032					SNP	A	A	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118593106 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc9b	coiled-coil domain containing 9B			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367276	regulatory region 367276			within coordinates
Rr397216	regulatory region 397216			1983 bp upstream
Rr563323	regulatory region 563323			1241 bp distal
Rr563324	regulatory region 563324			1119 bp distal
Rr563325	regulatory region 563325			230 bp distal
Rr563326	regulatory region 563326			26 bp proximal
Rr563327	regulatory region 563327			1565 bp proximal
Tssr25793	transcription start site region 25793			within coordinates