rs32920204 SNP Detail

Summary

• ID
  rs32920204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89000030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTCTCACA TCCACCTACC
  TGACAGTGTA GATGCAGACC TAGAAAACAG GGGTGGTTGA AACCTAGATC ACGGGTAAGG
  GCACTGGAGG TGACTGAGGA CTAGAACAGG CCTGGGAAGG ATCTGGCTGC TTTGGGAGAT
  ATTTAAATGA GATTCAAATC ACCACGGACA GGCCATTAGT TCCCACTGCA GTATTTGCAG
  R
  TGGAGCTGAA CATAACCTCC AGGGAACGGA GAAAGGAGGG TCATCAGAGA ATGCAGTTGT
  ACTCTGATCT TTGTGGGGCT GCGAAGCTTG AAAAAAGAGT GGGGCCCAGA ATATGGGGGT
  GCGATGCTTG AAAAAGAATA GGGCCCAGAA TACACCGATT CTTCCTAATC AAGCTCTGTC
  CTCCAGCCTA ACCCTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46747922	NES10744538	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32920204					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747922	NES10744538	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89000030 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13396	CpG island 13396	1003 bp distal
Cpgi13397	CpG island 13397	332 bp proximal
Fdps	farnesyl diphosphate synthetase	865 bp downstream
Rr579944	regulatory region 579944	1865 bp distal
Rr579945	regulatory region 579945	557 bp proximal
Rusc1	RUN and SH3 domain containing 1	Intron
Tssr34085	transcription start site region 34085	1153 bp upstream
Tssr34086	transcription start site region 34086	562 bp downstream
Tssr34087	transcription start site region 34087	635 bp downstream
Tssr34088	transcription start site region 34088	646 bp downstream