rs32920534 SNP Detail

Summary

• ID
  rs32920534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37514436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACATTC AAGCGGAGAT
  GCTATCGCAC AGGTGACCAG GACTCATAAG ACTGTACAGA TTCCTAAGGA GCTGCCACGG
  TGAGAAGAAA CTGTGGATTC AGGATGACTG GATGCAACCT GGGATGCCGA AACAGAGTGA
  CCATAGCAGT AACAGCAAGG AATTCAAATG AGGTCTACAG TTAAAGAGTA CTGGTGCCCA
  Y
  GAGGAGACTG GGTATGGCAA GCCTCTAATC CCAGCAGGGA GGCAGAGGTA GGTGGATCTC
  TGTTAGCTCA AGGCCAACAG GCCCACATAA TAAGGCCTCA TCAAAAAAAA AAAAAAAAAA
  AAAAAAGAGT ATTGAGCTCC CAGGATGACT CAGTGGGTAA AGGCACCCCA GCAAGGAACA
  AAGTATTTGG CTGTGCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47232624	NES11121066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32920534					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47232624	NES11121066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37514436 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	411 bp downstream
Rr409535	regulatory region 409535	1652 bp distal
Rr409536	regulatory region 409536	194 bp distal
Tssr11302	transcription start site region 11302	100 bp downstream