rs32920699 SNP Detail

Summary

• ID
  rs32920699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:186958878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGAAAGTT GCTCTACTGT
  GGGAAAGGGT ATGCTGTTGA ATAACAGTGC TGTAGGGTAG CTCACTGTGT AGTTAGGGAG
  CTGTGGCCTT TGGAGCATTT TAGGGTGTGT AGTCAGGATT CTGTTTCCTG CTGTTCAGAG
  GTCAGACCTT GTGCTGCGTG GGGCTTGGTG TGTTGATCTA TAGCTTGCCA CGGGATTCTG
  R
  TCACTTATGA AATGTAAACA CCTGATTTAT TACGGTATGG AAGCAGCTGA TCCTGGCCCT
  TAGAGAAATG GAATTTGTAG CATTCCTTTC TGTCCGTCTC AGGAAGCAGA CTGTCTTTTA
  TCTAATTGCC ACATGCTCAT TGCGAGTCAG AGAGTGAGCC TTTGCCGTTT ACCCAACTCA
  TTGCCTGTAA GAGCAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46747210	NES10638058	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32920699					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747210	NES10638058	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186958878 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpatch2	G patch domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr425579	regulatory region 425579			within coordinates
Rr425580	regulatory region 425580			190 bp proximal
Rr425581	regulatory region 425581			1864 bp proximal