rs32921394 SNP Detail

Summary

• ID
  rs32921394
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:186959086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAATGTAA ACACCTGATT
  TATTACGGTA TGGAAGCAGC TGATCCTGGC CCTTAGAGAA ATGGAATTTG TAGCATTCCT
  TTCTGTCCGT CTCAGGAAGC AGACTGTCTT TTATCTAATT GCCACATGCT CATTGCGAGT
  CAGAGAGTGA GCCTTTGCCG TTTACCCAAC TCATTGCCTG TAAGAGCAGC CAGGGTGCGC
  R
  TGTGTCCAGC TCGCGCCCTT ACATTGCTTA GAGCCAGAGG AAAATGGTGC GGGTGAAAGG
  GTCTGAGTTT TAATTTTAAT TTAATTTAAT TAAAATTGGC CTCATTTCAA CCTTGGTAAT
  TGTAGCCTTT GGATACTCGT GTGTGTTTGT GTGACTGTGG TTATGATAAG AACCCAGGTT
  GAGTTAATGA TAGTTTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46747216	NES10638060	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32921394					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46747216	NES10638060	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:186959086 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gpatch2	G patch domain containing 2			Intron
				Noncoding-Transcript-Variant
Rr425579	regulatory region 425579			within coordinates
Rr425580	regulatory region 425580			within coordinates
Rr425581	regulatory region 425581			1656 bp proximal