rs32923124 SNP Detail

Summary

• ID
  rs32923124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACACAGC AAAGGCTGCC
  TCGGGTTGTT TCTGCATAAC TTCCTCCTTT CAGAACCCTC AGAGTCTGAG ATTTTTCCAG
  CAGCTCGGTT GGTATTCTTC CTTCTGTACT GACGCAGAAT GTTGTTACCA GGTAGAAGCC
  AGGGCTCACG GCATTTATTT CTGTCTCTTG GACAACAGCC TTACCCTGCA GAGTCTACGG
  Y
  CTAGTGTCTC AGAATGGTCA ACTGGACATT TCCCTTCTCT CTAGCTGCTT TATGTCAGAA
  GGTTCACCAC CACCAGAAAC ACACTTGATT TTACATACTA AAGAGACAGT GAGAATTCCA
  GGAAGGTAAT TTGTACCTGA CAATCAGCAG GACCAAGAGG ACAGACAGCA TGTTCAAAAA
  TGGGGTTGAA AGCTTATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47232564	NES11121044	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T		C	C	C	C
ss148941506	ENSMUSSNP2449568	ENSEMBL	ENSEMBL_Sanger	f	SNP		C										T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32923124					SNP	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47232564	NES11121044	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513522 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	202 bp upstream
Rr409535	regulatory region 409535	738 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	1014 bp downstream