rs32923796 SNP Detail

Summary

• ID
  rs32923796
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37513889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGTTCA AAAATGGGGT
  TGAAAGCTTA TGAAAACAAA ACAAAAAAAA CAAAAACAAA AAACAAAACA AAACAAAAAA
  CCTTGTTTTC TGCTCTGAGA CAAAGAGTAC TACTGCCCAC ATAAATACTT CACTTTTTAA
  ACTTCAAGCA AAGGCAAACA CATACCACAG TATTTCTGTG AGCTTTACTA GTTTCTAAAA
  Y
  GGTCGTGTGC TGTAATATAG TGAGTCAGAA AGAGGAAGTT AAAAGGCTAA AAAAATTAAA
  AAAAAAAAAA AAAGGCGACT ACTTCTTCTT CATTTGAATG ATCTGTCCTA GCTTTTCTGT
  CTCCTCTCAT CTGCAGATGA CAGCAGACAT TCCCACACAG GCCCCAGCAC TCTTTCAGTT
  CAAATCACTT CATAAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47232576	NES11121048	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C	C	C	T		T		T	T	C		C
ss148941541	ENSMUSSNP2785239	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C					T
ss319691773	CHEV_1_37531653	CHEVERUD	SCREENING_POP	f	SNP											T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs32923796					SNP	C	T	C	C	C	T	C	C	C	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47232576	NES11121048	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37513889 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	within coordinates
Rr409535	regulatory region 409535	1105 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	647 bp downstream