rs32925515 SNP Detail

Summary

• ID
  rs32925515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:37514220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGATGA CAGCAGACAT
  TCCCACACAG GCCCCAGCAC TCTTTCAGTT CAAATCACTT CATAAACTCA CCTCTTCAGG
  AACCTAGTGG GATAGCCTAG TCCAGAACTT GCCTGGATCA TGACAACAGT CCCTATCCTT
  AATAAAGCCG CCAGTGGGTG CCTTTCAAAT GGCAGGCCTT GACACCTCAG CAAGGTCTGT
  R
  ACTAAGGTGC AATTGTGAGA CATTCAAGCG GAGATGCTAT CGCACAGGTG ACCAGGACTC
  ATAAGACTGT ACAGATTCCT AAGGAGCTGC CACGGTGAGA AGAAACTGTG GATTCAGGAT
  GACTGGATGC AACCTGGGAT GCCGAAACAG AGTGACCATA GCAGTAACAG CAAGGAATTC
  AAATGAGGTC TACAGTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47232597	NES11121055	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32925515					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47232597	NES11121055	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37514220 () rs orientation: forward

Symbol	Name	Function Class
Mgat4a	mannoside acetylglucosaminyltransferase 4, isoenzyme A	Intron
Rr396000	regulatory region 396000	195 bp downstream
Rr409535	regulatory region 409535	1436 bp distal
Rr409536	regulatory region 409536	within coordinates
Tssr11302	transcription start site region 11302	316 bp downstream