rs32926126 SNP Detail

Summary

• ID
  rs32926126
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153001466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATGTTGA TGCTGGGACT
  CAAACTCTGA TATTCTAGAA GAGGATCTTC CAATGGTCTT AACTGCTGAG TCATGTCTCC
  AGCCCCATCA GTATTACTCT TTAACCAGAC ATAGTGGTAA GAAACTTCCA GGACTTAAGT
  TGCAGTAGAA CTGGCCACAA GTCTGCAATT CAGAATTACT ACAAGACTAT CTAGTAAATC
  Y
  ATCCTGCTTC TCTAGCTCTG TGCCTCTTGG GAATATATCT GCTCTTTGGG ATGGTGTGTT
  GGTCCCAGGC ATTTATGGGT TTGTTTTTCA GCACTCATAA CAATCCAACC CAATACTAAA
  TCAACTAGGC TCAACCAAGT AGTTCTTTTG TTCCAAATAT CAATAAGGAT ATTCACATGT
  TCTATATTTA GTTAGTAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45213633	mCV22911093	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss147986861	ENSMUSSNP7172573	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32926126					SNP	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153001466 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12480	CpG island 12480	1855 bp proximal
Gm75427	predicted gene, 75427	within coordinates
Gm75432	predicted gene, 75432	1571 bp downstream
Rr39414	regulatory region 39414	1866 bp distal
Rr55859	regulatory region 55859	1134 bp proximal
Rr63655	regulatory region 63655	1859 bp distal
Rr397404	regulatory region 397404	1594 bp upstream
Tm9sf4	transmembrane 9 superfamily member 4	1757 bp upstream
Tssr20873	transcription start site region 20873	1746 bp upstream
Tssr20874	transcription start site region 20874	1775 bp upstream
Tssr20875	transcription start site region 20875	1978 bp upstream
Tssr26883	transcription start site region 26883	1914 bp downstream