rs32926973 SNP Detail

Summary

• ID
  rs32926973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CCATGGAGCC CCTCCTACCA CTCACTGCAG TGCTCACCAT GGAGCCCCTC CCACCACTCA
  CTGCAGTGCT CACCATGGAG CCCCTCCCAC CACTCACTGC AGTGCTCACC ATGGAGCCCC
  TCCCACCACT CACTGCAGTG CTCATCATGA AGCCCCTCCC ACCACTCACT GCAGTGCTCA
  CCATGGAGCC CCTCCCACCA TTCACTGCAG TGCTCACCAT GGAGCCCCTC CCACCACTCA
  CTGCAGTGCT CACCATGGAG CCCCTCCCAC CATTCACTGC AGTGCTCACC ATGGAGCCCC
  Y
  CCCACCACTC ACTGCAGTGC TCACCATGGA GCCCCTCCCA CCACTCACTG CAGTGCTCAC
  CACGGAGCCC AGCCTCTGCT TGAGTTTCTC CAGCACCTGG AGGCTGGGAA GTCCAACAGT
  CTCGCCGCTG GCCTGAACAT CCTGTTCAGC GTGGGAAAAA AAATGTTGCT TCTGTTTTAA
  ATAATCCCTT CCCATGAGCC ACTGCTCTGA TGGCAAGCTG TCCTTATCTT CAGTCAAGTG
  TTCCCTAGGG CCACACAGTG GTGAGGTCCC TGCAAGAGTC CCTTTAGCCT GGCAGATTTA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45713269	mCV25035752	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs32926973					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662776 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	997 bp downstream
Tssr39333	transcription start site region 39333	982 bp downstream
Tssr39334	transcription start site region 39334	933 bp downstream
Tssr39335	transcription start site region 39335	915 bp downstream
Tssr39336	transcription start site region 39336	899 bp downstream
Tssr39337	transcription start site region 39337	872 bp downstream
Tssr39338	transcription start site region 39338	839 bp downstream
Tssr39339	transcription start site region 39339	792 bp downstream
Tssr39340	transcription start site region 39340	744 bp downstream
Tssr39341	transcription start site region 39341	726 bp downstream
Tssr39342	transcription start site region 39342	640 bp downstream
Tssr39343	transcription start site region 39343	619 bp downstream
Tssr39344	transcription start site region 39344	558 bp downstream
Tssr39345	transcription start site region 39345	521 bp downstream
Tssr39346	transcription start site region 39346	506 bp downstream
Tssr39347	transcription start site region 39347	27 bp upstream
Tssr39348	transcription start site region 39348	538 bp upstream
Tssr39349	transcription start site region 39349	583 bp upstream
Tssr43605	transcription start site region 43605	892 bp upstream
Tssr43606	transcription start site region 43606	633 bp upstream
Tssr43607	transcription start site region 43607	351 bp upstream
Tssr43608	transcription start site region 43608	671 bp downstream