rs32927009 SNP Detail

Summary

• ID
  rs32927009
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11259708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CGCTGTTCAG ACTCTGGGCT TAGACACATA GGTGATAGGA AACCCGCCCA CATACCCAGG
  CACCTACACA ACCCCACATG CACACCCAGG CACCTACACA ACCCAAGGAC TCACCTTGCT
  GTCCTTTTGG ACCTGGTGGT CCCTGGAGTC CTTTAAGACC AGGGGGACCC TCAGGACCAG
  GGAGCCCTGG TTCTCCTTTG ATGACATCGT AGGGACCTGG AGGCCCAGGG GGACCTTGGA
  GACCTGTGGG AATGACAGGC AGAGGATCGG CTTCACTGTC AGCAGCCACT GTACCATCAC
  Y
  AAACACACCA TCACAGAGCC TCATCAAATG CACAGGTGAT GTGTGCTACA TCCTTCTTGT
  TTAACTAAGC CAAAAATCCT GCCCTCCCAA CTCCATTCTG GAAACCAACA GCTGCCACCT
  GCCCTTCCTC TCCTGAAGAT GCCCGTGGGC ACAGCAAACG CCACCCAGAG TCATTGTGAG
  CAGTGGAAGG CAGATTTTCT TCTGTTCCAA CTCTAAGTGG CTGGTGTCGG TCTGATGTCA
  AAGCCTGTGC AACATGCTGG ATCCCCAACA CGAAGGTTCC TCTCGCCCCC CTCTCTTCTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46211518	mCV23752768	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148666848	ENSMUSSNP4579229	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs32927009					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11259708 () rs orientation: forward

Symbol	Name	Function Class
Col4a1	collagen, type IV, alpha 1	within coordinates
Tssr80369	transcription start site region 80369	1865 bp downstream