rs32927370 SNP Detail

Summary

• ID
  rs32927370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

           C CACTCATTGC AGTGCTCACC ATGGAGCCCC TCCTACCACT CACTGCAGTG
  CTCACCATGG AGCCCCTCCC ACCACTCACT GCAGTGCTCA CCATGGAGCC CCTCCCACCA
  CTCACTGCAG TGCTCACCAT GGAGCCCCTC CCACCACTCA CTGCAGTGCT CATCATGAAG
  CCCCTCCCAC CACTCACTGC AGTGCTCACC ATGGAGCCCC TCCCACCATT CACTGCAGTG
  CTCACCATGG AGCCCCTCCC ACCACTCACT GCAGTGCTCA CCATGGAGCC CCTCCCACCA
  Y
  TCACTGCAGT GCTCACCATG GAGCCCCTCC CACCACTCAC TGCAGTGCTC ACCATGGAGC
  CCCTCCCACC ACTCACTGCA GTGCTCACCA CGGAGCCCAG CCTCTGCTTG AGTTTCTCCA
  GCACCTGGAG GCTGGGAAGT CCAACAGTCT CGCCGCTGGC CTGAACATCC TGTTCAGCGT
  GGGAAAAAAA ATGTTGCTTC TGTTTTAAAT AATCCCTTCC CATGAGCCAC TGCTCTGATG
  GCAAGCTGTC CTTATCTTCA GTCAAGTGTT CCCTAGGGCC ACACAGTGGT GAGGTCCCTG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	DBA/2J
ss45714021	mCV25035741	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss147462723	ENSMUSSNP4878088	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	DBA/2J
rs32927370					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662748 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	969 bp downstream
Tssr39333	transcription start site region 39333	954 bp downstream
Tssr39334	transcription start site region 39334	905 bp downstream
Tssr39335	transcription start site region 39335	887 bp downstream
Tssr39336	transcription start site region 39336	871 bp downstream
Tssr39337	transcription start site region 39337	844 bp downstream
Tssr39338	transcription start site region 39338	811 bp downstream
Tssr39339	transcription start site region 39339	764 bp downstream
Tssr39340	transcription start site region 39340	716 bp downstream
Tssr39341	transcription start site region 39341	698 bp downstream
Tssr39342	transcription start site region 39342	612 bp downstream
Tssr39343	transcription start site region 39343	591 bp downstream
Tssr39344	transcription start site region 39344	530 bp downstream
Tssr39345	transcription start site region 39345	493 bp downstream
Tssr39346	transcription start site region 39346	478 bp downstream
Tssr39347	transcription start site region 39347	55 bp upstream
Tssr39348	transcription start site region 39348	566 bp upstream
Tssr39349	transcription start site region 39349	611 bp upstream
Tssr43605	transcription start site region 43605	864 bp upstream
Tssr43606	transcription start site region 43606	605 bp upstream
Tssr43607	transcription start site region 43607	323 bp upstream
Tssr43608	transcription start site region 43608	699 bp downstream