rs32928154 SNP Detail

Summary

• ID
  rs32928154
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89096163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACAGATC AGAGCAATGC TGGAGCCCAT AAGCATTAGC
  TGGTTAGGAC CAGCAGCCTT CAGCAGCCCT GTGCACCACT GGCTGGCTCA AAAAGAAATC
  Y
  GCTCTATACT CTCCCAAGGT GTTCCTTTCC TGCCTGCCTT TGAGGGCTCC TGTTGCTTGC
  CTCTGCCTCT CTGAAGGGCA GAGCTTCTGT CCTGTGCTGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46748651	NES10741248	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32928154					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46748651	NES10741248	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89096163 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13408	CpG island 13408			1249 bp distal
Entrep3	endosomal transmembrane epsin interactor 3			mRNA-UTR
				Noncoding-Transcript-Variant
Rr367465	regulatory region 367465			1648 bp upstream
Rr579970	regulatory region 579970			114 bp proximal
Rr579971	regulatory region 579971			1506 bp proximal
Tssr30053	transcription start site region 30053			1481 bp downstream
Tssr30054	transcription start site region 30054			1447 bp downstream
Tssr30055	transcription start site region 30055			1399 bp downstream
Tssr30056	transcription start site region 30056			1368 bp downstream
Tssr30057	transcription start site region 30057			1026 bp downstream
Tssr30058	transcription start site region 30058			960 bp downstream
Tssr30059	transcription start site region 30059			891 bp downstream
Tssr30060	transcription start site region 30060			859 bp downstream
Tssr30061	transcription start site region 30061			528 bp downstream
Tssr30062	transcription start site region 30062			490 bp downstream
Tssr30063	transcription start site region 30063			446 bp downstream
Tssr34094	transcription start site region 34094			219 bp upstream