rs32928156 SNP Detail

Summary

• ID
  rs32928156
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89097298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCATGCAC ACTCCAGCAT
  ATGTGTGGAA GTCAGAGGAC AATTGTGTGA AGTCAGCTCT TTGCTTCCAC CTTTATGTGG
  GTGGGTTCTG GGAATTAAAC TAGGGTGACC AGGTTTGCAC AGCACAGAAC ATGTGTGTAT
  GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTTTTG GTAAGTGTGA GACTGCACAC
  R
  ACATGGTACA TGTTCCATAG CAAGTTCAGA AATCAGAGGA CAGTGTTAGA CCTTGCCTCC
  CATCTTGTTT GAAACAGGAT CTCTGTTGTC TTATCTGCTG CATCTGCCAG GCTAGTTATT
  CCTCAGCTGG GGATTGCCCT GTCTCCTAAA TCCTCATTCT CCCATACAAG CCAACTGGGA
  TTACAGGGCC AGACTTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46748654	NES10741136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32928156					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46748654	NES10741136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89097298 () rs orientation: forward

Symbol	Name	Function Class
Entrep3	endosomal transmembrane epsin interactor 3	696 bp downstream
Rr367465	regulatory region 367465	513 bp upstream
Rr579970	regulatory region 579970	1000 bp distal
Rr579971	regulatory region 579971	371 bp proximal
Tssr30060	transcription start site region 30060	1994 bp downstream
Tssr30061	transcription start site region 30061	1663 bp downstream
Tssr30062	transcription start site region 30062	1625 bp downstream
Tssr30063	transcription start site region 30063	1581 bp downstream
Tssr34094	transcription start site region 34094	1354 bp upstream