rs32928162 SNP Detail

Summary

• ID
  rs32928162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89097906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAGATGA TTGTGAGCTG
  CCATGTGGGT GCTGAGAATT GAACTCTGAC CCTTGGATGA CCTTAACCAC TGAGCTGTTT
  CTCGGGCTCT CCAAACTTGA ACAGTTGAGT CTTCTGTTGC CACTTGCCGA GTGGCAAGGT
  TCCAGTCCGG GTTATCATGT CATGCCGGTT TTACAAAGTT GTCACTCACT TCTGCAATCA
  R
  CCAAGATCCA GCACCAGCAC CTTTCGTGTG AGTTTCCTCC TCATCTTTGA AGACACCACA
  GTTTCCTGTT TTTCTTCTTT CTTTACTCTC TGGGTATCCT TTACCGGCTT TTACACCGCT
  GAGCCATCTT ACCAGCCCGA CAATGGAATT CTTGATTCCT GCCCTCACAT CTGGTCTTCC
  CCTGCTCTCA TCTCCATAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46748660	NES10741105	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32928162					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46748660	NES10741105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89097906 () rs orientation: forward

Symbol	Name	Function Class
Entrep3	endosomal transmembrane epsin interactor 3	1304 bp downstream
Rr367465	regulatory region 367465	within coordinates
Rr579970	regulatory region 579970	1608 bp distal
Rr579971	regulatory region 579971	within coordinates
Tssr34094	transcription start site region 34094	1962 bp upstream