rs32930054 SNP Detail

Summary

• ID
  rs32930054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89099749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCACAGGCA GAATGTCGCT AAGCACCAAG AACTTATAAG
  GCCATCACTT GATTCCAGTC CTTTTTTTTT TTTTTTTTTT TTTTTAAGAT TTATTTATTA
  Y
  GCTGGCATGG TGGCGCATGC CTTTAATCCC AACACTTGGG AGGCAGAGAC AGGCAGATTT
  CTGAGTTCGA GGCCAGCCTG GTCTACAGAG TGAGTTCCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46748678	NES10741019	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32930054					SNP	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46748678	NES10741019	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89099749 () rs orientation: forward

Symbol	Name	Function Class
Rr367465	regulatory region 367465	1755 bp downstream
Rr579971	regulatory region 579971	1517 bp distal
Rr579972	regulatory region 579972	1081 bp proximal
Rr579973	regulatory region 579973	1514 bp proximal
Rr579974	regulatory region 579974	1631 bp proximal