rs32931127 SNP Detail

Summary

• ID
  rs32931127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89245437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGGGGC AGCAGCCGCA
  TCGCCCCTGG GGTCCAGTCT GGTCTGGCCC GGCTGGTCCC GGCCCACTTC TCTGTCCCGG
  CGAGAAAGGT ACAAAAGTGG AGGGGGGTGG GGGGTACGGA ACGGAGGAGG GGTGTGGAGG
  CTCCTAGACC ACAGCCCTGG GTAACTTTCC ACCAATGAAA ACTTGTCTCC GCCTCTCTAC
  Y
  CAGCGCCAAC TCTTGTTAAC CCTTTGTGCT TCCTGTGCCC CGAGCGCTCC AGGTTAGCCA
  AAGCGTCCCT TTGTTATCTC ACTGTGCTGG AAGAGGGTGG CATGGTGGAT ATTCCACTAA
  GGACTTAATG CTTGAGGGTT TTGGTTTTCT ATGTGTGTGT ACGTGTCGGC GCTTCTATTC
  CTTCTCCACC TTATTTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749725	NES10735566	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32931127					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749725	NES10735566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89245437 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	1510 bp downstream
Cpgi13423	CpG island 13423	within coordinates
Efna4	ephrin A4	102 bp upstream
Rr580049	regulatory region 580049	270 bp distal
Rr580050	regulatory region 580050	within coordinates
Rr580051	regulatory region 580051	1449 bp proximal
Tssr30091	transcription start site region 30091	1510 bp upstream
Tssr34115	transcription start site region 34115	151 bp upstream
Tssr34116	transcription start site region 34116	64 bp upstream