rs32931458 SNP Detail

Summary

• ID
  rs32931458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:162504011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCC TCCTTCGGTT TAACAAAGTG
  Y
  TTCCCCCTCC CCATTCCACT CCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45213875	mCV22771164	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss148193136	ENSMUSSNP4827214	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320601353	CHEV_2_162487827	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32931458					SNP	C	C	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162504011 () rs orientation: forward

Symbol	Name	Function Class
9430021M05Rik	RIKEN cDNA 9430021M05 gene	within coordinates
Cpgi12617	CpG island 12617	398 bp distal
Ptprt	protein tyrosine phosphatase receptor type T	944 bp upstream
Rr569218	regulatory region 569218	1008 bp distal
Rr569221	regulatory region 569221	809 bp distal
Rr569222	regulatory region 569222	within coordinates
Rr569223	regulatory region 569223	1180 bp proximal
Tssr21417	transcription start site region 21417	852 bp downstream
Tssr21418	transcription start site region 21418	831 bp downstream
Tssr21419	transcription start site region 21419	771 bp downstream
Tssr27272	transcription start site region 27272	1033 bp upstream
Tssr27273	transcription start site region 27273	1001 bp upstream