rs32931796 SNP Detail

Summary

• ID
  rs32931796
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89246861 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTCCCA GCCACTGGTC
  AGAGGGTGGG GATGCAGGTC TGACGACTTA GGTCATTTGT CTCTAGCTGT GGTGGGGGCT
  GAGCAGCATT GCTGGGGAGA ACTTGGGAGT CCAGAGGCCA TCGGACCCAG ACTGGGCAGA
  AGCAAGCCAG AGGCATCCTA AGTGACACAT TCTTGTTGAC CCTTTCTGGG AAGTGATCCT
  M
  TTCTACAGGC CCTGGTTTGA CCCAGCAGCG TCTCCTAGTG GCCAGACCTG CAAACAGCAG
  GAACTACCCA GCTTCCAGGA GCAGACACAT TCCAAGATCT CACATTTATT ACAACAGAGC
  AGAGATAGAC AGTGTCCATG TCCTTCCGCC ACCTACTCCA GCCCCGGCTT CGGCCCCTCC
  CCAGCATCCC GCTGCAGCTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749734	NES10735544	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32931796					SNP	A	A	A	A	A	A	C	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749734	NES10735544	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89246861 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	86 bp downstream
Cpgi13423	CpG island 13423	1333 bp distal
Efna4	ephrin A4	1526 bp upstream
Rr580049	regulatory region 580049	1694 bp distal
Rr580050	regulatory region 580050	1036 bp distal
Rr580051	regulatory region 580051	25 bp proximal
Rr580052	regulatory region 580052	1117 bp proximal
Tssr30091	transcription start site region 30091	86 bp upstream
Tssr34115	transcription start site region 34115	1575 bp upstream
Tssr34116	transcription start site region 34116	1488 bp upstream
Tssr34117	transcription start site region 34117	586 bp downstream
Tssr34118	transcription start site region 34118	881 bp downstream