rs32931799 SNP Detail

Summary

• ID
  rs32931799
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89247350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGGGGCA GAGGTTCCAT
  TTCTTTGAGT CTTAGAGCTT GAGAAGGAGG CAGCCAAATC TCCAGAGGTC AGAGGTAGAG
  CGAAGATGCT GCAGGGGGTG GTGGAGCTGG CCTGGAGTTT AGAAAAGCCA AGAAGGAAAA
  TGGTCAGAAC TCCTGCCTAG ATGCCTCGCT GGCAGCAAGT CACTTAACCT CAGCAACACC
  Y
  TCTTCACCTA CCTGGAGGGC ACCACCAGCG GCAAGCTTCC ATCTCCTGGG CCAGGCAGGT
  CACCTGGTGG GTGCTGGCCC TGTGGGTTGG CAGGCAGTGG CTTTCTTGGG GGTGGGGGTT
  TGGTAGGCCC CTGAGACTGA GAAAGAAGGC CAGTTTGGAA AGAGGTCATG TTTCTCACCC
  ACAATGTAGG GGTTCTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46749737	NES10735545	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32931799					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749737	NES10735545	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89247350 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	within coordinates
Cpgi13423	CpG island 13423	1822 bp distal
Rr580050	regulatory region 580050	1525 bp distal
Rr580051	regulatory region 580051	443 bp distal
Rr580052	regulatory region 580052	628 bp proximal
Tssr30091	transcription start site region 30091	394 bp downstream
Tssr34116	transcription start site region 34116	1977 bp upstream
Tssr34117	transcription start site region 34117	97 bp downstream
Tssr34118	transcription start site region 34118	392 bp downstream