rs32935007 SNP Detail

Summary

• ID
  rs32935007
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121949862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA GGTTCTCTAG TGGCCTTAGA
  Y
  ACCTGATCCT CCTTCACCAG CTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45214178	mCV25324169	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147409370	ENSMUSSNP3896919	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
ss320487094	CHEV_2_121945117	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32935007					SNP	T	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121949862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	785 bp distal
Gm75635	predicted gene, 75635	392 bp downstream
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	727 bp downstream
Rr55508	regulatory region 55508	261 bp distal
Rr373779	regulatory region 373779	113 bp downstream
Spg11	SPG11, spatacsin vesicle trafficking associated	995 bp upstream
Tssr19803	transcription start site region 19803	827 bp downstream
Tssr25950	transcription start site region 25950	1032 bp upstream
Tssr25951	transcription start site region 25951	984 bp upstream