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rs32935007 SNP Detail
Summary
  • ID
    rs32935007
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:121949862 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          ATAAA GGTTCTCTAG TGGCCTTAGA
    Y
    ACCTGATCCT CCTTCACCAG CTTTT                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
ss45214178 mCV25324169 ABI CRAMUS_MOUSE f SNP T T C T
ss147409370 ENSMUSSNP3896919 ENSEMBL ENSEMBL_Sanger f SNP T T T
ss320487094 CHEV_2_121945117 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
LG/J
SM/J
rs32935007 SNP T T C T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:121949862 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12168 CpG island 12168 785 bp distal
Gm75635 predicted gene, 75635 392 bp downstream
Patl2 protein associated with topoisomerase II homolog 2 (yeast) 727 bp downstream
Rr55508 regulatory region 55508 261 bp distal
Rr373779 regulatory region 373779 113 bp downstream
Spg11 SPG11, spatacsin vesicle trafficking associated 995 bp upstream
Tssr19803 transcription start site region 19803 827 bp downstream
Tssr25950 transcription start site region 25950 1032 bp upstream
Tssr25951 transcription start site region 25951 984 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory