rs32935048 SNP Detail

Summary

• ID
  rs32935048
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCCAGGCAT GCACATGATG TACAGATATA CATACAGGCA
  AAACACTCAT ACACATAAAA TAAGATAAGA TAAAATAAAA TAAAATAAGT GAAAAAAAAA
  M
  CAGACAACTG GGAATACAAT GAAAACACAG AGATAAGCTC ATTTAATAGC CTTGACCCTC
  TTATTACCAT CATGTGTATT TTCTATAAAG TTATAAAAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45214751	mCV22515907	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss147245736	ENSMUSSNP3809658	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
ss320462293	CHEV_2_113872605	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32935048					SNP	A	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877350 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	413 bp downstream
Rr562815	regulatory region 562815	1159 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	693 bp downstream
Tssr601	transcription start site region 601	703 bp downstream
Tssr19429	transcription start site region 19429	415 bp upstream
Tssr19430	transcription start site region 19430	510 bp upstream
Tssr19431	transcription start site region 19431	590 bp upstream
Tssr19432	transcription start site region 19432	686 bp upstream
Tssr19433	transcription start site region 19433	1252 bp upstream
Tssr19434	transcription start site region 19434	1305 bp upstream
Tssr25660	transcription start site region 25660	442 bp downstream
Tssr25661	transcription start site region 25661	459 bp downstream
Tssr25662	transcription start site region 25662	516 bp downstream
Tssr25663	transcription start site region 25663	579 bp downstream
Tssr25664	transcription start site region 25664	609 bp downstream
Tssr25665	transcription start site region 25665	717 bp downstream
Tssr25666	transcription start site region 25666	1284 bp downstream
Tssr25667	transcription start site region 25667	1311 bp downstream
Tssr25668	transcription start site region 25668	1347 bp downstream
Tssr25669	transcription start site region 25669	1376 bp downstream