rs32935909 SNP Detail

Summary

• ID
  rs32935909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3548654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGCCATC AGAGATAACA
  GCATTTGGGA CCAGAAAGAA CCTGCCGTAC GCGATCGGTC TTTCCAGTTC GTGCCTTCCG
  TGGGGATACA GAACAGTAAG TCGCTTAATA AAACTTGCTG TCTGAATGGA GGGACTTGCA
  TCCTGGGGTC CTTCTGTGCC TGCCCTCCTT CCTTCTATGG ACGCAACTGT GAACATGATG
  Y
  TCGCAAAGAG CACTGTGGGT CTATCCTCCA TGGCACCTGG CTGCCCAAGA AGTGTTCCCT
  GTGCAGATGC TGGCACGGCC AGCTCCACTG TCTTCCTCAG ACCTTTCTAC CTGGCTGTGA
  TGGTCACGTG ATGGACCAGG ACCTCAAAGC ATCCAGGACT CTGTGTCAAA CGCCGTCTGT
  GATGACCACT TTTATGCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39472002	mCV24110554	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss325087892	CHEV_16_3730790	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32935909					SNP	C	C	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3548654 () rs orientation: forward

Symbol	Name	Function Class
Rr328787	regulatory region 328787	1690 bp proximal
Tdgf1-ps1	teratocarcinoma-derived growth factor, pseudogene 1	within coordinates
Tssr136822	transcription start site region 136822	760 bp downstream
Tssr136823	transcription start site region 136823	488 bp downstream