rs32937096 SNP Detail

Summary

• ID
  rs32937096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:89245285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGCACAGC CTGGGAGCGC
  GCGGGCCCAG CTCGGCTCTC GCCTCGCTCG GCCGTGCTAC CTGGGGTTAG AGGAGTTCCA
  GTAGATTGGG TGGCGGAGGC TGGAGCACCC CGGCAGGCGC GAGCCGAGCA GCGCGGCCCA
  GAGCACAGTC CGCAGCAGGG GCAGCAGCCG CATCGCCCCT GGGGTCCAGT CTGGTCTGGC
  Y
  CGGCTGGTCC CGGCCCACTT CTCTGTCCCG GCGAGAAAGG TACAAAAGTG GAGGGGGGTG
  GGGGGTACGG AACGGAGGAG GGGTGTGGAG GCTCCTAGAC CACAGCCCTG GGTAACTTTC
  CACCAATGAA AACTTGTCTC CGCCTCTCTA CTCAGCGCCA ACTCTTGTTA ACCCTTTGTG
  CTTCCTGTGC CCCGAGCGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46749719	NES10735562	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs32937096					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46749719	NES10735562	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89245285 () rs orientation: forward

Symbol	Name	Function Class
4731419I09Rik	RIKEN cDNA 4731419I09 gene	within coordinates
Adam15	ADAM metallopeptidase domain 15	1662 bp downstream
Cpgi13423	CpG island 13423	within coordinates
Efna4	ephrin A4	within coordinates
Rr580049	regulatory region 580049	118 bp distal
Rr580050	regulatory region 580050	40 bp proximal
Rr580051	regulatory region 580051	1601 bp proximal
Tssr30091	transcription start site region 30091	1662 bp upstream
Tssr34115	transcription start site region 34115	within coordinates
Tssr34116	transcription start site region 34116	27 bp downstream