rs32937697 SNP Detail

Summary

• ID
  rs32937697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:53423039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGATG CAACTTCATT
  GGTTCAGGTC CTAGGCCAAC CAATCCACAA TGCAAGAACC TTGGTCAGCT TGGGGACGGG
  CTTAACTGTC AGGGACTGTG AGAAGCAGGG TGAGGACTGG AGGGGATCCA CTTGTCTATC
  AAGAGTGGGG GAGGAGCTAC TCCCCAAAGA CATTTGAAGA TGGATCGTCT ACTGCTAAGA
  Y
  AACAAGCGTA CACTATTGGG GAATCTTCCT TCCTGTGTTT AATTCATGTA TCACACGTTC
  CCTCTTTGCT GTGCAGCCTT GTCTCCTTAC CTAACAAGTT CCTGAGGGGG CCTGAGGAGC
  AGCCATCTTA CTGCACAGTC ATTTGTCTTC CTCCCTGTAC TTCGGTTGCC CGTGGGACTG
  CATCAGTCAT CGGCAACAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47734427	NES10229636	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs32937697					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47734427	NES10229636	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:53423039 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15867	CpG island 15867	1188 bp proximal
Gm40303	predicted gene, 40303	within coordinates
Rr399079	regulatory region 399079	1234 bp upstream
Rr611581	regulatory region 611581	951 bp proximal
Rr611582	regulatory region 611582	1618 bp proximal
Smim20	small integral membrane protein 20	1409 bp upstream
Tssr46209	transcription start site region 46209	1406 bp upstream
Tssr46210	transcription start site region 46210	1433 bp upstream