rs32937990 SNP Detail

Summary

• ID
  rs32937990
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74318514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCGTGTTGG CCACTGCCCA
  CCGCCAGCTG TGTGAGATCC GCCGACTGGA GCGGGCAGTG TGCCGCGATG TACCCTCAAC
  CCTGGCTAGG GCTCTCACCT GGAGGCAGGC TAGGGCACAG GCAGGAGCCA CACTGCTCTT
  CTTGCTGTGT TGGGGGCCCT ATGTGGCCAC ATTGCTCCTG TCAGTCTTGG CCTATGAGCG
  W
  CGCCCACCAC TAGGGCCTGG AACTCTGTTA TCGCTCATCT CATTGGGCAG CACCAGTGCT
  GCCGCTGTGC CTGTGGCCAT GGGGCTGGGT GATCAGCGCT ACACAGCCCC CTGGAGGACA
  GCTGCCCAAA GGTGTCTACG AGTGCTTCGA GGAAGAGCCA AGAGGGACAA TCCAGGCCCC
  AGCACTGCCT ACCACACCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49420998	NES12784349	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs32937990					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49420998	NES12784349	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74318514 () rs orientation: forward

Symbol	Name	Function Class
Aamp	angio-associated migratory protein	485 bp downstream
Gm28364	predicted gene 28364	1806 bp upstream
Gpbar1	G protein-coupled bile acid receptor 1	within coordinates
Rr17376	regulatory region 17376	within coordinates
Tssr7371	transcription start site region 7371	1801 bp upstream
Tssr7372	transcription start site region 7372	1827 bp upstream
Tssr7373	transcription start site region 7373	1859 bp upstream
Tssr7374	transcription start site region 7374	1870 bp upstream
Tssr12291	transcription start site region 12291	1757 bp downstream