rs32938369 SNP Detail

Summary

• ID
  rs32938369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52317032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GTCATTAATG TAAAATGGTC
  Y
  CTTCAGTCAG TAAAAACACA CCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45214968	mCV24651220	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146590359	ENSMUSSNP3241285	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320303843	CHEV_2_52282540	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs32938369					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52317032 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	within coordinates
Cacnb4	calcium channel, voltage-dependent, beta 4 subunit	1300 bp downstream
Cpgi11647	CpG island 11647	1862 bp distal
Rr556941	regulatory region 556941	1348 bp distal
Tssr17726	transcription start site region 17726	1999 bp downstream
Tssr17727	transcription start site region 17727	1774 bp downstream