rs32938485 SNP Detail

Summary

• ID
  rs32938485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:68891354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATCTCCCTGG AAGCACTGTG CCTCAGGCCC AAGGCCACTC CTTGCAGCCT GGCTCTCACA
  ATGCCCTTGT CATCTCCCAG GGACAGTCCT TGTTCTGTTT GTCCCTCACC TGATGGTTTC
  TCCTAACCAA CACCTCTGCC TCTTTACAGT CACCCTTCCC CTTATATTTG TCCCTGAGAA
  GCTAGGAGTA GGATATTCAC CAGCCTGAAC TCCAGACTGC ATGGAACTGG CTCTAGCCCA
  TTGTCACAAT GTGACTTTGG AGAACTTGAT GTCTAGGTGC CTCAGCTCCC ATCTAAAAAA
  R
  AAAAAAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGC TCTGAATATT GTTTTATGGA
  GCTGCCATCA GGAAGACATC ACAGCTTCGG AGCTTCTGCA CATGAAAATT AGTAGTCAAA
  TTAGAAGGTA CTTAGGCGTT TGCTAGGTAT TCATTGCAAA TGTGGGGTTT AGAAAGAGGA
  AATATGCATA CTTTCTACGC CAGCTTTGAG GAAATGCCAC AGCTAGAATT CAGGTGTAGG
  AGCAGGTACT GGGATGGCTG AAGGAAGAGG AACAAGAAGA AGATATGGTT GCTAACTATA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45215997	mCV25079741	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs32938485					SNP	G	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68891354 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cers6	ceramide synthase 6			Intron
				Noncoding-Transcript-Variant
Rr558369	regulatory region 558369			381 bp proximal
Rr558370	regulatory region 558370			500 bp proximal
Rr558371	regulatory region 558371			827 bp proximal