rs32938678 SNP Detail

Summary

• ID
  rs32938678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74316994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGCTGGTC CTAGGACAGA GGCCAGAGGA
  Gcagagggca gaatccttct gtattgactt tgatcctagC AACAGCAGAT GCTCCTGTTG
  ACAGGATCCA GGACCCCTCC CACTGGCCCT GCAATGTGGC CTGGGGCTGA GACCAGGCAG
  Y
  CAAGGAAAAG TAAGCTCAGT TTGGAGGCTT TTCCTTGTCA CCTGGTTTCA GCTTGTATTT
  AGGGGGGTCT TTGTTTAGTA CCCCCAATTC CTTACCAAGC ATCTCCCCAC CCTTCCCTCC
  GGTTCCCAGG AAGGGCCCTG TTGCTAGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49421006	NES12784345	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		C	C	T		T
ss319794406	CHEV_1_74324409	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs32938678					SNP	T	T	T	T	T	T	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49421006	NES12784345	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74316994 () rs orientation: forward

Symbol	Name	Function Class
Gpbar1	G protein-coupled bile acid receptor 1	715 bp upstream
Rr17376	regulatory region 17376	1407 bp proximal
Tssr7370	transcription start site region 7370	715 bp downstream