rs32939804 SNP Detail

Summary

• ID
  rs32939804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:24779476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCAGAACT GTTCTTGGAA TGTGCTTTCA TGCCTTTCCC
  AGTTGCAGCA GATAGGAGTG AGTTACTTTA AATTATTCAT TATTATTATT TGTTTGTATG
  Y
  CTCTGTTGGG AAACCCTGCT ACTTAAGATC AAAGTCTATC ATGTCAGGAT AGCTCCTCTG
  AGCTCTGCAC AAAAATGGAG GTCTCACTTC TCCAGTGCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45216010	mCV22669188	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs32939804					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:24779476 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ehmt1	euchromatic histone methyltransferase 1			Intron
				Noncoding-Transcript-Variant
Gm37139	predicted gene, 37139			within coordinates
Rr552926	regulatory region 552926			368 bp distal
Rr552927	regulatory region 552927			1062 bp proximal